Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs11651643 chr17:45483229 A/G 8.85E-5 258 19.97 34 32.35 KM Plot
SARC rs116616340 chr3:53132371 C/G 0 250 32.88 27.12 2.13 KM Plot
SARC rs11682644 chr2:70222527 A/G 1.14E-6 251 32.35 33.3 10.6 KM Plot
SARC rs11682652 chr2:70222563 A/G 5.26E-8 254 32.35 33.3 10.72 KM Plot
SARC rs116985991 chr7:2091436 C/A 6.02E-9 254 30.75 36.53 5.1 KM Plot
SARC rs11703867 chr22:30828233 A/G 5.46E-5 252 35.57 26.35 14.23 KM Plot
SARC rs11705639 chr22:30831852 G/A 5.16E-5 253 35.62 24.45 14.23 KM Plot
SARC rs11710292 chr3:53117798 T/C 0 258 32.3 31.97 2.13 KM Plot
SARC rs11710394 chr3:53015839 A/G 2.21E-14 257 30.85 34.57 1.17 KM Plot
SARC rs11710707 chr3:52975916 A/G 2.09E-14 254 30.85 35.37 1.17 KM Plot
SARC rs11710887 chr3:71950770 G/C 4.07E-5 254 16.17 35.47 32.6 KM Plot
SARC rs11711773 chr3:53040456 C/A 1.67E-14 257 30.93 35.37 1.17 KM Plot
SARC rs11712653 chr3:53070875 A/C 0 258 2.13 31.97 32.3 KM Plot
SARC rs11713171 chr3:53066280 G/C 2.13E-14 254 31.78 33.77 1.17 KM Plot
SARC rs11713206 chr3:52999243 A/G 1.18E-14 255 30.93 35.37 1.17 KM Plot